Roofer working on a residential roof, representing small business contractors and employee classification issues for Missouri businesses.

W-2 Employees vs 1099 Contractors: What Missouri Small Businesses Need to Know

February 03, 20262 min read

One of the most common — and costly — mistakes small business owners make is misclassifying workers. Many businesses believe they’re hiring independent contractors, only to find out later that the IRS considers those workers employees.

If you operate a business in Neosho, Joplin, or anywhere in Southwest Missouri, understanding the difference between W-2 employees and 1099 contractors is critical to protecting your business from audits, penalties, and back taxes.

Contractor on roof representing the difference between subcontractors and W-2 employees

What Is a W-2 Employee?

A W-2 employee is someone who works under your control. In general, if you:

  • Set their schedule

  • Train them how to do their job

  • Require them to follow your procedures

  • Provide uniforms or equipment

  • Have the authority to hire or fire them

Then the IRS likely considers that worker an employee.

With W-2 employees, employers are required to:

  • Withhold federal and state income taxes

  • Pay Social Security and Medicare taxes

  • File payroll tax returns

  • Issue a W-2 by January 31

What Is a 1099 Independent Contractor?

A 1099 contractor operates independently. Contractors typically:

  • Work for multiple clients

  • Control how and when the work is done

  • Provide their own tools or equipment

  • Are hired for a specific project or time period

When paying a contractor, you do not withhold taxes. Instead, you issue a 1099-NEC by January 31 for total payments made during the year.

Why Worker Classification Matters

Misclassification isn’t just a paperwork issue — it can trigger serious financial consequences.

If the IRS audits your business and determines that your contractors should have been classified as employees, you may be responsible for:

  • Back payroll taxes

  • Interest

  • Penalties for each worker

  • Penalties for late or missing 1099 filings

Late 1099 filings can result in penalties starting at$60 per form, increasing the longer the delay continues. If the IRS believes the misclassification was intentional, penalties can be significantly higher.

What Happens During an IRS Audit?

During an audit, an IRS agent may review your tax return and payroll records. If they notice:

  • No wages reported

  • No payroll tax filings

  • Workers operating as employees

They can reclassify those workers retroactively. That means payroll taxes, interest, and penalties dating back to the employee’s start date.

What Should You Do If You’re Unsure?

If you’re currently paying workers as contractors but they function like employees, it’s often in your best interest to reclassify sooner rather than later. Addressing the issue proactively can reduce risk and limit penalties.

Working with an experienced local accountant can help you:

  • Properly classify workers

  • Correct past filings

  • Set up compliant payroll systems

  • Avoid IRS problems before they start

Get Help from a Local Missouri Tax Accountant

At Lemman Tax Accountant PLLC, we help small businesses in Neosho, Joplin, Webb City, Seneca, and surrounding Missouri communities (as well as nationwide) stay compliant with IRS rules while focusing on growth.

If you have questions about payroll, worker classification, or 1099 and W-2 filing requirements, professional guidance now can save you thousands later. Let's schedule a meeting today!

Nedda Lemman is the owner of Lemman Tax Accountant, located just off the square in Neosho, Missouri. With more than two decades of experience in tax preparation, bookkeeping, and small business accounting, Nedda provides clients with the confidence and clarity they need to manage their finances well.

Before moving to Missouri, Nedda owned and operated a thriving accounting practice in Arizona for 21 years. As an Enrolled Agent licensed by the IRS, she is authorized to represent clients in all 50 states, offering the highest level of expertise and professionalism to individuals and small business owners alike.

Nedda’s approach to accounting is deeply personal and rooted in her faith and integrity. She believes that every client is more than a number—they’re a partner in success. By taking time to understand each client’s goals and challenges, Nedda creates practical strategies that bring peace of mind and long-term financial stability.

When she’s not helping clients, Nedda enjoys spending time with her husband of over 40 years, their four children, and five grandchildren. Guided by her strong faith, she strives to serve others with honesty, compassion, and dedication—both in life and in business.

Nedda Lemman

Nedda Lemman is the owner of Lemman Tax Accountant, located just off the square in Neosho, Missouri. With more than two decades of experience in tax preparation, bookkeeping, and small business accounting, Nedda provides clients with the confidence and clarity they need to manage their finances well. Before moving to Missouri, Nedda owned and operated a thriving accounting practice in Arizona for 21 years. As an Enrolled Agent licensed by the IRS, she is authorized to represent clients in all 50 states, offering the highest level of expertise and professionalism to individuals and small business owners alike. Nedda’s approach to accounting is deeply personal and rooted in her faith and integrity. She believes that every client is more than a number—they’re a partner in success. By taking time to understand each client’s goals and challenges, Nedda creates practical strategies that bring peace of mind and long-term financial stability. When she’s not helping clients, Nedda enjoys spending time with her husband of over 40 years, their four children, and five grandchildren. Guided by her strong faith, she strives to serve others with honesty, compassion, and dedication—both in life and in business.

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